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  Home > Genomes > Escherichia coli K-12 subMG1655 > gi|16130097|ref|NP_416664.1|

Domain assignment for gi|16130097|ref|NP_416664.1| from Escherichia coli K-12 subMG1655

Domain architecture

Domain assignment details

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Strong hits

Sequence:  gi|16130097|ref|NP_416664.1|
Domain Number 1 Region: 1-276
Classification Level Classification E-value
Superfamily Xylose isomerase-like 2.62e-105
Family Endonuclease IV 1.11e-10
Further Details:      
 

Protein sequence

External link(s) gi|16130097|ref|NP_416664.1|
Sequence length 285
Comment endonuclease IV with intrinsic 3'-5' exonuclease activity [Escherichia coli str. K-12 substr. MG1655]
Sequence 
MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYH
YTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEE
DCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVCIDT
CHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIG
HDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQTEKAVA
Download sequence
Identical sequences B1X857 B2NLX5 B2P8V3 B2PI58 B3ACG5 B3AKV3 B3B782 B3BLP9 B3C0T8 B5YWV0 B6ZYS6 P0A6C1 P0A6C2 Q32EQ7
gi|254794058|ref|YP_003078895.1| gi|291283413|ref|YP_003500231.1| gi|82777340|ref|YP_403689.1| 1qtwA gi|15832305|ref|NP_311078.1| gi|238901341|ref|YP_002927137.1| gi|170081781|ref|YP_001731101.1| gi|89108976|ref|AP_002756.1| gi|209400626|ref|YP_002271571.1|

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2001-2010 The Medical Research Council and the SUPERFAMILY authors; Derek Wilson, Martin Madera and Julian Gough.